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Energetic of Biological Macromolecules Part E

8th May 2007

Energetic of Biological Macromolecules Part E

posted in Enzymology |

One of the most intriguing problems in biological energetics is that of cooperativity. From the discovery of cooperativity and allostery in hemoglobin 100 years ago (Bohr et al., 1904)1 to the characterization of cooperativity in a myriad of processes in modern times (i.e., transport, catalysis, signaling, assembly, folding), the molecular mechanisms by which energy is transferred from one part of a macromolecule to another continues to challenge us. Of course, the problem has many layers, as a molecule as ‘‘simple’’ and familiar as hemoglobin can simultaneously sense the chemical potential of each physiological ligand and adjust its interactions with the others accordingly. Ironically, the very allosteric intermediates that hold the structural and energetic secrets of cooperativity are the same whose populations are suppressed and, in many instances, largely obscured by the nature of cooperativity itself. Thus, innovative methodologies and techniques have been developed to address cooperative systems, many of which are presented in this volume Energetics of Biological Macromolecules Part E and its companion volume, Part D. The reader will observe remarkable similarities among the wide range of experimental strategies employed, attesting to fundamental issues inherent in all cooperative systems.

 Jo M. Holt, Michael L. Johnson, and Gary K. Ackers

Table of Contents

  • Editors-In-Chief (Page ii)
    Contributors to Volume 380 (pp.ix-x )
    Preface (Page xi)
    Methods In Enzymology (pp.xiii-xxxiv )
    Contributions to the Catalytic Efficiency of Enzymes, and the Binding of Ligands to Receptors, from Improvements in Packing within Enzymes and Receptors (pp3-19)
    Dudley H. Williams , Elaine Stephens , Min Zhou and Rosa Zerella
  •  Structural Interpretation of pH and Salt-Dependent Processes in   Proteins with Computational Methods (pp20-51)
     Bertrand Garcia-Moreno E and Carolyn A. Fitch
  •  Electrostatic Basis for Bioenergetics (pp52-84)
    Avital Shurki , Marek trajbl , Claudia N. Schutz and Arieh Warshel
  •  Local and Global Control Mechanisms in Allosteric Threonine  Deaminase (pp85-106)
     D. Travis Gallagher , Diana Chinchilla , Heidi Lau and Edward Eisenstein
  •  Methods for Analyzing Cooperativity in Phosphoglycerate Dehydrogenase (pp106-131)
    Grant Gregory A.
  •  Fluorescent Probes Applied to Catalytic Cooperativity in ATP Synthase (pp132-152)
    Joachim Weber and Alan E. Senior
  •  Measurement of Energetics of Conformational Change in Cobalamin-Dependent Methionine Synthase (pp152-169)
    Vahe Bandarian and Rowena G. Matthews
  •  Spectroscopic and Kinetic Methods for Ligand–Protein Interactions of Glutamate Receptor (pp170-187)
    Vasanthi Jayaraman
  •  Quantitative Analysis and Interpretation of Allosteric Behavior (pp187-203)
    Gregory D. Reinhart
  •  The Immobilized Template Assay for Measuring Cooperativity in Eukaryotic Transcription Complex Assembly (pp207-219)
    Kristina M. Johnson , Jin Wang , Andrea Smallwood and Michael Carey
  • Characterization of the Cargo Attachment Complex of Cytoplasmic Dynein Using NMR and Mass Spectrometry (pp219-241)
    Elisar Barbar and Michael Hare
  • Circular Dichroism of Protein-Folding Intermediates (pp242-285)
    Robert W. Woody
  • Amide Hydrogen ExchangeMass Spectrometry Applied to Cooperative Protein Folding: Equilibrium Unfolding of Staphylococcus aureus Aldolase (pp285-308)
    Hai Pan and David L. Smith
  • Kinetic and Spectroscopic Analysis of Early Events in Protein Folding (pp308-327)
    David S. Kliger , Eefei Chen and Robert A. Goldbeck
  • Hydrogen-Exchange Strategies Applied to Energetics of Intermediate Processes in Protein Folding (pp328-349)
    David Wildes and Susan Marqusee
  • Cooperativity Principles in Protein Folding (pp350-379)
    Hue Sun Chan , Seishi Shimizu and Huseyin Kaya
  • Native State Hydrogen-Exchange Analysis of Protein Folding and Protein Motional Domains (pp379-400)
    Clare Woodward , Natalia Carulla and George Barany
  • The Preparation of 19F-Labeled Proteins for NMR Studies (pp400-415)
    Carl Frieden , Sydney D. Hoeltzli and James G. Bann
  • Author Index (pp417-434 ) Subject Index (pp435-443)
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